Background: Illumina sequencing platform is widely used in genome research. Sequence reads quality assessment\r\nand control are needed for downstream analysis. However, software that provides efficient quality assessment and\r\nversatile filtration methods is still lacking.\r\nResults: We have developed a toolkit named HTQC ââ?¬â?? abbreviation of High-Throughput Quality Control ââ?¬â?? for\r\nsequence reads quality control, which consists of six programs for reads quality assessment, reads filtration and\r\ngeneration of graphic reports.\r\nConclusions: The HTQC toolkit can generate reads quality assessment faster than existing tools, providing guidance\r\nfor reads filtration utilities that allow users to choose different strategies to remove low quality reads.
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